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A case for assemblage-level conservation to address the biodiversity crisis
Traditional conservation efforts have centred on safeguarding individual species, but these strategies have limitations in a world where entire ecosystems are rapidly changing. Ecosystem conservation can maintain critical ecological functions, but often lacks the detail necessary for the effective conservation of threatened or endangered species. The conservation of such species is mandated by policies and remains a dominant focus of natural resource management. In this Perspective, we propose that assemblage-level conservation targeting groups of taxonomically related or functionally similar species can bridge the gap between species and ecosystems and help to address global biodiversity loss. This approach has previously been limited by data and methodological constraints, but the ongoing growth of biodiversity data, advances in ecological modelling and breakthroughs in computational power have now made effective assemblage-level conservation feasible. Community models provide insights at both the species level and the assemblage level while appropriately accounting for species variability in detection during sampling and uncertainty in biological inferences. Assemblage-level conservation can link both species-specific needs and broader ecological dynamics, ultimately enabling effective strategies for conserving threatened species, ecological communities and ecosystem functions.
Coastal wetland resilience through local, regional and global conservation
Coastal wetlands, including tidal marshes, mangrove forests and tidal flats, support the livelihoods of millions of people. Understanding the resilience of coastal wetlands to the increasing number and intensity of anthropogenic threats (such as habitat conversion, pollution, fishing and climate change) can inform what conservation actions will be effective. In this Review, we synthesize anthropogenic threats to coastal wetlands and their resilience through the lens of scale. Over decades and centuries, anthropogenic threats have unfolded across local, regional and global scales, reducing both the extent and quality of coastal wetlands. The resilience of existing coastal wetlands is driven by their quality, which is modulated by both physical conditions (such as sediment supply) and ecological conditions (such as species interactions operating from local through to global scales). Protection and restoration efforts, however, are often localized and focus on the extent of coastal wetlands. The future of coastal wetlands will depend on an improved understanding of their resilience, and on society’s actions to enhance both their extent and quality across different scales.
Successes and failures of conservation actions to halt global river biodiversity loss
To address the losses of river biodiversity worldwide, various conservation actions have been implemented to promote recovery of species and ecosystems. In this Review, we assess the effectiveness of these actions globally and regionally, and identify causes of success and failure. Overall, actions elicit little improvement in river biodiversity, in contrast with reports from terrestrial and marine ecosystems. This lack of improvement does not necessarily indicate a failure of any individual action. Rather, it can be attributed in part to remaining unaddressed stressors driving biodiversity loss; a poor match between the spatial scale of action and the scale of the affected area; and absence of adequate monitoring, including insufficient timescales, missing reference and control sites or insufficient selection of targeted taxa. Furthermore, outcomes are often not reported and are unevenly distributed among actions, regions and organism groups. Expanding from local-scale actions to coordinated, transformative, catchment-scale management approaches shows promise for improving outcomes. Such approaches involve identifying major stressors, appropriate conservation actions and source populations for recolonization, as well as comprehensive monitoring, relevant legislation and engaging all stakeholders to promote the recovery of river biodiversity.
Wildlife’s contributions to people
Nature’s contributions to people (NCP) are increasingly incorporated in modern conservation policy and management frameworks; however, the contributions of wildlife remain underrepresented in the NCP science that informs policy and practice. In this Perspective, we explore wildlife’s role in NCP. We use existing evidence to map wildlife contributions onto the conceptual framework of NCP and find that wildlife directly supports 12 of 18 NCP categories. We identify NCP provided or supported by wildlife as wildlife’s contributions to people (WCP). Knowledge gaps regarding WCP are prevalent, and failure to identify or account for WCP in policy and management could prevent both NCP and biodiversity targets from being achieved. To improve understanding of WCP and its integration into conservation decision-making, advances in monitoring and modelling wildlife are required and taxonomic, geographic and cultural biases in existing research should be addressed. These advances are necessary to connect biodiversity policies aimed at protecting wildlife species with NCP policies intended to ensure the long-term delivery of benefits to people, and to achieve widespread sustainable relationships with nature.
Genomic and transcriptomic insights into complex virus–prokaryote interactions in marine biofilms
Marine biofilms are complex communities of microorganisms that play a crucial ecological role in oceans. Although prokaryotes are the dominant members of these biofilms, little is known about their interactions with viruses. By analysing publicly available and newly sequenced metagenomic data, we identified 2446 virus–prokaryote connections in 84 marine biofilms. Most of these connections were between the bacteriophages in the Uroviricota phylum and the bacteria of Proteobacteria, Cyanobacteria and Bacteroidota. The network of virus–host pairs is complex; a single virus can infect multiple prokaryotic populations or a single prokaryote is susceptible to several viral populations. Analysis of genomes of paired prokaryotes and viruses revealed the presence of 425 putative auxiliary metabolic genes (AMGs), 239 viral genes related to restriction–modification (RM) systems and 38,538 prokaryotic anti-viral defence-related genes involved in 15 defence systems. Transcriptomic evidence from newly established biofilms revealed the expression of viral genes, including AMGs and RM, and prokaryotic defence systems, indicating the active interplay between viruses and prokaryotes. A comparison between biofilms and seawater showed that biofilm prokaryotes have more abundant defence genes than seawater prokaryotes, and the defence gene composition differs between biofilms and the surrounding seawater. Overall, our study unveiled active viruses in natural biofilms and their complex interplay with prokaryotes, which may result in the blooming of defence strategists in biofilms. The detachment of bloomed defence strategists may reduce the infectivity of viruses in seawater and result in the emergence of a novel role of marine biofilms.
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